{
  "schemaVersion": "1.0",
  "item": {
    "slug": "bioskills",
    "name": "BioSkills",
    "source": "tencent",
    "type": "skill",
    "category": "AI 智能",
    "sourceUrl": "https://clawhub.ai/djemec/bioskills",
    "canonicalUrl": "https://clawhub.ai/djemec/bioskills",
    "targetPlatform": "OpenClaw"
  },
  "install": {
    "downloadMode": "redirect",
    "downloadUrl": "/downloads/bioskills",
    "sourceDownloadUrl": "https://wry-manatee-359.convex.site/api/v1/download?slug=bioskills",
    "sourcePlatform": "tencent",
    "targetPlatform": "OpenClaw",
    "installMethod": "Manual import",
    "extraction": "Extract archive",
    "prerequisites": [
      "OpenClaw"
    ],
    "packageFormat": "ZIP package",
    "includedAssets": [
      "scripts/install-bioskills.sh",
      "SKILL.md"
    ],
    "primaryDoc": "SKILL.md",
    "quickSetup": [
      "Download the package from Yavira.",
      "Extract the archive and review SKILL.md first.",
      "Import or place the package into your OpenClaw setup."
    ],
    "agentAssist": {
      "summary": "Hand the extracted package to your coding agent with a concrete install brief instead of figuring it out manually.",
      "steps": [
        "Download the package from Yavira.",
        "Extract it into a folder your agent can access.",
        "Paste one of the prompts below and point your agent at the extracted folder."
      ],
      "prompts": [
        {
          "label": "New install",
          "body": "I downloaded a skill package from Yavira. Read SKILL.md from the extracted folder and install it by following the included instructions. Tell me what you changed and call out any manual steps you could not complete."
        },
        {
          "label": "Upgrade existing",
          "body": "I downloaded an updated skill package from Yavira. Read SKILL.md from the extracted folder, compare it with my current installation, and upgrade it while preserving any custom configuration unless the package docs explicitly say otherwise. Summarize what changed and any follow-up checks I should run."
        }
      ]
    },
    "sourceHealth": {
      "source": "tencent",
      "status": "healthy",
      "reason": "direct_download_ok",
      "recommendedAction": "download",
      "checkedAt": "2026-04-23T16:43:11.935Z",
      "expiresAt": "2026-04-30T16:43:11.935Z",
      "httpStatus": 200,
      "finalUrl": "https://wry-manatee-359.convex.site/api/v1/download?slug=4claw-imageboard",
      "contentType": "application/zip",
      "probeMethod": "head",
      "details": {
        "probeUrl": "https://wry-manatee-359.convex.site/api/v1/download?slug=4claw-imageboard",
        "contentDisposition": "attachment; filename=\"4claw-imageboard-1.0.1.zip\"",
        "redirectLocation": null,
        "bodySnippet": null
      },
      "scope": "source",
      "summary": "Source download looks usable.",
      "detail": "Yavira can redirect you to the upstream package for this source.",
      "primaryActionLabel": "Download for OpenClaw",
      "primaryActionHref": "/downloads/bioskills"
    },
    "validation": {
      "installChecklist": [
        "Use the Yavira download entry.",
        "Review SKILL.md after the package is downloaded.",
        "Confirm the extracted package contains the expected setup assets."
      ],
      "postInstallChecks": [
        "Confirm the extracted package includes the expected docs or setup files.",
        "Validate the skill or prompts are available in your target agent workspace.",
        "Capture any manual follow-up steps the agent could not complete."
      ]
    },
    "downloadPageUrl": "https://openagent3.xyz/downloads/bioskills",
    "agentPageUrl": "https://openagent3.xyz/skills/bioskills/agent",
    "manifestUrl": "https://openagent3.xyz/skills/bioskills/agent.json",
    "briefUrl": "https://openagent3.xyz/skills/bioskills/agent.md"
  },
  "agentAssist": {
    "summary": "Hand the extracted package to your coding agent with a concrete install brief instead of figuring it out manually.",
    "steps": [
      "Download the package from Yavira.",
      "Extract it into a folder your agent can access.",
      "Paste one of the prompts below and point your agent at the extracted folder."
    ],
    "prompts": [
      {
        "label": "New install",
        "body": "I downloaded a skill package from Yavira. Read SKILL.md from the extracted folder and install it by following the included instructions. Tell me what you changed and call out any manual steps you could not complete."
      },
      {
        "label": "Upgrade existing",
        "body": "I downloaded an updated skill package from Yavira. Read SKILL.md from the extracted folder, compare it with my current installation, and upgrade it while preserving any custom configuration unless the package docs explicitly say otherwise. Summarize what changed and any follow-up checks I should run."
      }
    ]
  },
  "documentation": {
    "source": "clawhub",
    "primaryDoc": "SKILL.md",
    "sections": [
      {
        "title": "bioSkills Installer",
        "body": "Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis."
      },
      {
        "title": "Installation",
        "body": "Run the bundled install script to download and install all bioSkills:\n\nbash scripts/install-bioskills.sh\n\nOr install only specific categories:\n\nbash scripts/install-bioskills.sh --categories \"single-cell,variant-calling,differential-expression\""
      },
      {
        "title": "What Gets Installed",
        "body": "Category GroupCategoriesSkillsSequence & Alignmentsequence-io, sequence-manipulation, alignment, alignment-files, database-access40Read Processingread-qc, read-alignment11RNA-seq & Expressiondifferential-expression, rna-quantification, expression-matrix14Single-Cell & Spatialsingle-cell, spatial-transcriptomics25Variant Analysisvariant-calling, copy-number, phasing-imputation21Epigenomicschip-seq, atac-seq, methylation-analysis, hi-c-analysis25Metagenomics & Microbiomemetagenomics, microbiome13Genomics & Assemblygenome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design29Regulatory & Causalgene-regulatory-networks, causal-genomics, rna-structure13Temporal & Ecologicaltemporal-genomics, ecological-genomics11Immunology & Clinicalimmunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics25Specialized Omicsproteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy36RNA Biologysmall-rna-seq, epitranscriptomics, clip-seq, ribo-seq20Phylogenetics & Evolutionphylogenetics, population-genetics, comparative-genomics16Structural & Systemsstructural-biology, systems-biology11Screens & Cytometrycrispr-screens, flow-cytometry, imaging-mass-cytometry22Pathway & Integrationpathway-analysis, multi-omics-integration, restriction-analysis14Infrastructuredata-visualization, machine-learning, workflow-management, reporting, experimental-design, long-read-sequencing39WorkflowsEnd-to-end pipelines (FASTQ to results)40"
      },
      {
        "title": "After Installation",
        "body": "Once installed, skills are automatically triggered based on the task at hand. Example requests:\n\n\"I have RNA-seq counts from treated vs control samples - find the differentially expressed genes\"\n\"Call variants from this whole genome sequencing BAM file\"\n\"Cluster my single-cell RNA-seq data and find marker genes\"\n\"Predict the structure of this protein sequence\"\n\"Run a metagenomics classification on these shotgun reads\""
      },
      {
        "title": "Source",
        "body": "GitHub: https://github.com/GPTomics/bioSkills"
      },
      {
        "title": "Related Skills",
        "body": "After installation, 425 individual skills become available across these categories:\nsequence-io, sequence-manipulation, database-access, alignment, alignment-files,\nvariant-calling, phylogenetics, differential-expression, structural-biology,\nsingle-cell, pathway-analysis, restriction-analysis, methylation-analysis,\nchip-seq, metagenomics, long-read-sequencing, read-qc, read-alignment,\nrna-quantification, genome-assembly, genome-intervals, data-visualization,\nexpression-matrix, copy-number, proteomics, flow-cytometry, population-genetics,\nmulti-omics-integration, spatial-transcriptomics, machine-learning,\nworkflow-management, microbiome, metabolomics, phasing-imputation,\nprimer-design, hi-c-analysis, imaging-mass-cytometry, atac-seq,\ncrispr-screens, reporting, experimental-design, clinical-databases,\ntcr-bcr-analysis, small-rna-seq, epitranscriptomics, clip-seq, ribo-seq,\ngenome-engineering, systems-biology, epidemiological-genomics,\nimmunoinformatics, comparative-genomics, alternative-splicing,\nchemoinformatics, liquid-biopsy, genome-annotation, gene-regulatory-networks,\ncausal-genomics, rna-structure, temporal-genomics, ecological-genomics, workflows"
      }
    ],
    "body": "bioSkills Installer\n\nMeta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis.\n\nInstallation\n\nRun the bundled install script to download and install all bioSkills:\n\nbash scripts/install-bioskills.sh\n\n\nOr install only specific categories:\n\nbash scripts/install-bioskills.sh --categories \"single-cell,variant-calling,differential-expression\"\n\nWhat Gets Installed\nCategory Group\tCategories\tSkills\nSequence & Alignment\tsequence-io, sequence-manipulation, alignment, alignment-files, database-access\t40\nRead Processing\tread-qc, read-alignment\t11\nRNA-seq & Expression\tdifferential-expression, rna-quantification, expression-matrix\t14\nSingle-Cell & Spatial\tsingle-cell, spatial-transcriptomics\t25\nVariant Analysis\tvariant-calling, copy-number, phasing-imputation\t21\nEpigenomics\tchip-seq, atac-seq, methylation-analysis, hi-c-analysis\t25\nMetagenomics & Microbiome\tmetagenomics, microbiome\t13\nGenomics & Assembly\tgenome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design\t29\nRegulatory & Causal\tgene-regulatory-networks, causal-genomics, rna-structure\t13\nTemporal & Ecological\ttemporal-genomics, ecological-genomics\t11\nImmunology & Clinical\timmunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics\t25\nSpecialized Omics\tproteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy\t36\nRNA Biology\tsmall-rna-seq, epitranscriptomics, clip-seq, ribo-seq\t20\nPhylogenetics & Evolution\tphylogenetics, population-genetics, comparative-genomics\t16\nStructural & Systems\tstructural-biology, systems-biology\t11\nScreens & Cytometry\tcrispr-screens, flow-cytometry, imaging-mass-cytometry\t22\nPathway & Integration\tpathway-analysis, multi-omics-integration, restriction-analysis\t14\nInfrastructure\tdata-visualization, machine-learning, workflow-management, reporting, experimental-design, long-read-sequencing\t39\nWorkflows\tEnd-to-end pipelines (FASTQ to results)\t40\nAfter Installation\n\nOnce installed, skills are automatically triggered based on the task at hand. Example requests:\n\n\"I have RNA-seq counts from treated vs control samples - find the differentially expressed genes\"\n\"Call variants from this whole genome sequencing BAM file\"\n\"Cluster my single-cell RNA-seq data and find marker genes\"\n\"Predict the structure of this protein sequence\"\n\"Run a metagenomics classification on these shotgun reads\"\nSource\n\nGitHub: https://github.com/GPTomics/bioSkills\n\nRelated Skills\n\nAfter installation, 425 individual skills become available across these categories: sequence-io, sequence-manipulation, database-access, alignment, alignment-files, variant-calling, phylogenetics, differential-expression, structural-biology, single-cell, pathway-analysis, restriction-analysis, methylation-analysis, chip-seq, metagenomics, long-read-sequencing, read-qc, read-alignment, rna-quantification, genome-assembly, genome-intervals, data-visualization, expression-matrix, copy-number, proteomics, flow-cytometry, population-genetics, multi-omics-integration, spatial-transcriptomics, machine-learning, workflow-management, microbiome, metabolomics, phasing-imputation, primer-design, hi-c-analysis, imaging-mass-cytometry, atac-seq, crispr-screens, reporting, experimental-design, clinical-databases, tcr-bcr-analysis, small-rna-seq, epitranscriptomics, clip-seq, ribo-seq, genome-engineering, systems-biology, epidemiological-genomics, immunoinformatics, comparative-genomics, alternative-splicing, chemoinformatics, liquid-biopsy, genome-annotation, gene-regulatory-networks, causal-genomics, rna-structure, temporal-genomics, ecological-genomics, workflows"
  },
  "trust": {
    "sourceLabel": "tencent",
    "provenanceUrl": "https://clawhub.ai/djemec/bioskills",
    "publisherUrl": "https://clawhub.ai/djemec/bioskills",
    "owner": "djemec",
    "version": "3.0.0",
    "license": null,
    "verificationStatus": "Indexed source record"
  },
  "links": {
    "detailUrl": "https://openagent3.xyz/skills/bioskills",
    "downloadUrl": "https://openagent3.xyz/downloads/bioskills",
    "agentUrl": "https://openagent3.xyz/skills/bioskills/agent",
    "manifestUrl": "https://openagent3.xyz/skills/bioskills/agent.json",
    "briefUrl": "https://openagent3.xyz/skills/bioskills/agent.md"
  }
}