Requirements
- Target platform
- OpenClaw
- Install method
- Manual import
- Extraction
- Extract archive
- Prerequisites
- OpenClaw
- Primary doc
- SKILL.md
Tencent SkillHub · Developer Tools
LobsterBio - Use
Analyze biological data using Lobster AI — single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. USE THIS SKILL WHEN: - Analyzing single-cell or bulk RNA-seq data - Searching PubMed/GEO for papers or datasets - Running quality control on biological data - Clustering cells, finding markers, differential expression - Creating publication-quality visualizations - Working with H5AD, CSV, 10X, GEO/SRA accessions TRIGGER PHRASES: "analyze cells", "search PubMed", "download GEO", "run QC", "cluster", "find markers", "differential expression", "UMAP", "volcano plot", "single-cell", "RNA-seq", "bioinformatics" ASSUMES: Lobster is installed and configured. For setup issues, tell user to run `lobster config-test` and fix any errors before proceeding.
skill openclawclawhub Free
Analyze biological data using Lobster AI — single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. USE THIS SKILL WHEN: - Analyzing single-cell or bulk RNA-seq data - Searching PubMed/GEO for papers or datasets - Running quality control on biological data - Clustering cells, finding markers, differential expression - Creating publication-quality visualizations - Working with H5AD, CSV, 10X, GEO/SRA accessions TRIGGER PHRASES: "analyze cells", "search PubMed", "download GEO", "run QC", "cluster", "find markers", "differential expression", "UMAP", "volcano plot", "single-cell", "RNA-seq", "bioinformatics" ASSUMES: Lobster is installed and configured. For setup issues, tell user to run `lobster config-test` and fix any errors before proceeding.
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Install for OpenClaw
Quick setup
- Download the package from Yavira.
- Extract the archive and review SKILL.md first.
- Import or place the package into your OpenClaw setup.
Package facts
- Download mode
- Yavira redirect
- Package format
- ZIP package
- Source platform
- Tencent SkillHub
- What's included
- references/cli-commands.md, references/bulk-rnaseq-workflow.md, references/research-workflow.md, references/agents.md, references/visualization.md, references/single-cell-workflow.md
Validation
- Use the Yavira download entry.
- Review SKILL.md after the package is downloaded.
- Confirm the extracted package contains the expected setup assets.
Install with your agent
Agent handoff
Hand the extracted package to your coding agent with a concrete install brief instead of figuring it out manually.
- Download the package from Yavira.
- Extract it into a folder your agent can access.
- Paste one of the prompts below and point your agent at the extracted folder.
New install
I downloaded a skill package from Yavira. Read SKILL.md from the extracted folder and install it by following the included instructions. Tell me what you changed and call out any manual steps you could not complete.
Upgrade existing
I downloaded an updated skill package from Yavira. Read SKILL.md from the extracted folder, compare it with my current installation, and upgrade it while preserving any custom configuration unless the package docs explicitly say otherwise. Summarize what changed and any follow-up checks I should run.
Trust & source
Release facts
- Source
- Tencent SkillHub
- Verification
- Indexed source record
- Version
- 1.0.1
Provenance
- Publisher
- cewinharhar
- Source page
- View original listing
- Canonical URL
- Open canonical page
Documentation
Lobster AI Usage Guide
Lobster AI is a multi-agent bioinformatics platform. You interact via natural language or slash commands — Lobster routes to specialist agents automatically.
Installation
If Lobster is not installed, guide the user to the right command for their platform:
macOS / Linux
curl -fsSL https://install.lobsterbio.com | bash
Windows (PowerShell)
irm https://install.lobsterbio.com/windows | iex
Manual install (any platform)
uv tool install 'lobster-ai[full,anthropic]' && lobster init # or: pip install 'lobster-ai[full]' && lobster init After install, lobster init configures API keys and selects agent packages.
Upgrading
uv tool: uv tool upgrade lobster-ai pip: pip install --upgrade lobster-ai
Adding Agents (uv tool installs)
Users with uv tool installs add agents via: uv tool install lobster-ai --with lobster-transcriptomics --with lobster-proteomics Running lobster init will guide this process and generate the command.
Quick Reference
TaskReferenceCLI commandsreferences/cli-commands.mdSingle-cell analysisreferences/single-cell-workflow.mdBulk RNA-seq analysisreferences/bulk-rnaseq-workflow.mdLiterature & datasetsreferences/research-workflow.mdVisualizationreferences/visualization.mdAvailable agentsreferences/agents.md
Interactive Chat
lobster chat # Start interactive session lobster chat --workspace ./myproject # Custom workspace lobster chat --reasoning # Enable detailed reasoning
Single Query
lobster query "Your request" lobster query --session-id latest "Follow-up request"
Natural Language (Primary)
Just describe what you want: "Download GSE109564 and run quality control" "Cluster the cells and find marker genes" "Compare hepatocytes vs stellate cells"
Slash Commands (System Operations)
/data # Show loaded data info /files # List workspace files /workspace list # List available datasets /workspace load 1 # Load dataset by index /plots # Show generated visualizations /save # Save current session /status # Show system status /help # All commands
Session Continuity
# Start named session lobster query --session-id "my_analysis" "Load GSE109564" # Continue with context lobster query --session-id latest "Now cluster the cells" lobster query --session-id latest "Find markers for cluster 3"
Agent System
Lobster routes to specialist agents automatically: AgentHandlesSupervisorRoutes queries, coordinates agentsResearch AgentPubMed search, GEO discovery, paper extractionData ExpertFile loading, format conversion, downloadsTranscriptomics ExpertscRNA-seq: QC, clustering, markersDE Analysis ExpertDifferential expression, statistical testingAnnotation ExpertCell type annotation, gene set enrichmentVisualization ExpertUMAP, heatmaps, volcano plotsProteomics ExpertMass spec analysis [alpha]Genomics ExpertVCF, GWAS, variant analysis [alpha]ML ExpertEmbeddings, classification [alpha]
Workspace & Outputs
Default workspace: .lobster_workspace/ Output files: ExtensionContent.h5adProcessed AnnData objects.htmlInteractive visualizations.pngPublication-ready plots.csvExported tables.jsonMetadata, provenance Managing outputs: /files # List all outputs /plots # View visualizations /open results.html # Open in browser /read summary.csv # Preview file contents
Typical Workflow
# 1. Start session lobster chat --workspace ./my_analysis # 2. Load or download data "Download GSE109564 from GEO" # or /workspace load my_data.h5ad # 3. Quality control "Run quality control and show me the metrics" # 4. Analysis "Filter low-quality cells, normalize, and cluster" # 5. Interpretation "Identify cell types and find marker genes" # 6. Visualization "Create UMAP colored by cell type" /plots # 7. Export "Export marker genes to CSV" /save
Troubleshooting Quick Reference
IssueCheckLobster not respondinglobster config-testNo data loaded/data to verify, /workspace list to see availableAnalysis failsTry with --reasoning flagMissing outputsCheck /files and workspace directory
Documentation
Online docs: docs.omics-os.com Key sections: Guides → CLI Commands Guides → Data Analysis Workflows Tutorials → Single-Cell RNA-seq Agents → Package documentation
Category context
Code helpers, APIs, CLIs, browser automation, testing, and developer operations.
Source: Tencent SkillHub
Largest current source with strong distribution and engagement signals.
Package contents
Included in package
6 Docs
- references/agents.md
- references/bulk-rnaseq-workflow.md
- references/cli-commands.md
- references/research-workflow.md
- references/single-cell-workflow.md
- references/visualization.md