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Pharmaclaw Literature Agent

Search and retrieve biomedical and scientific literature from PubMed and Semantic Scholar with structured summaries, citation tracking, and open-access PDFs.

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High Signal

Search and retrieve biomedical and scientific literature from PubMed and Semantic Scholar with structured summaries, citation tracking, and open-access PDFs.

โฌ‡ 0 downloads โ˜… 0 stars Unverified but indexed

Install for OpenClaw

Quick setup
  1. Download the package from Yavira.
  2. Extract the archive and review SKILL.md first.
  3. Import or place the package into your OpenClaw setup.

Requirements

Target platform
OpenClaw
Install method
Manual import
Extraction
Extract archive
Prerequisites
OpenClaw
Primary doc
SKILL.md

Package facts

Download mode
Yavira redirect
Package format
ZIP package
Source platform
Tencent SkillHub
What's included
SKILL.md, scripts/biorxiv_search.py, scripts/chain_entry.py, scripts/chain_entry_v2.py, scripts/clinicaltrials_search.py, scripts/pubmed_search.py

Validation

  • Use the Yavira download entry.
  • Review SKILL.md after the package is downloaded.
  • Confirm the extracted package contains the expected setup assets.

Install with your agent

Agent handoff

Hand the extracted package to your coding agent with a concrete install brief instead of figuring it out manually.

  1. Download the package from Yavira.
  2. Extract it into a folder your agent can access.
  3. Paste one of the prompts below and point your agent at the extracted folder.
New install

I downloaded a skill package from Yavira. Read SKILL.md from the extracted folder and install it by following the included instructions. Tell me what you changed and call out any manual steps you could not complete.

Upgrade existing

I downloaded an updated skill package from Yavira. Read SKILL.md from the extracted folder, compare it with my current installation, and upgrade it while preserving any custom configuration unless the package docs explicitly say otherwise. Summarize what changed and any follow-up checks I should run.

Trust & source

Release facts

Source
Tencent SkillHub
Verification
Indexed source record
Version
2.0.0

Documentation

ClawHub primary doc Primary doc: SKILL.md 6 sections Open source page

Overview

Dual-source literature search combining PubMed (biomedical focus) and Semantic Scholar (broader CS/ML/AI coverage). Deduplicates across sources, enriches with citation metrics and TLDR summaries. Key capabilities: PubMed search with MeSH terms, abstracts, publication types Semantic Scholar search with citation counts, influential citations, TLDR Paper lookup by DOI or PMID Citation tracking (who cited this paper?) Related paper discovery (what did this paper reference?) Automatic query construction from compound/target/disease inputs Cross-source deduplication and enrichment

Quick Start

# Search by topic python scripts/pubmed_search.py --query "KRAS G12C inhibitor" --max-results 5 # Search Semantic Scholar (includes ML/AI papers) python scripts/semantic_scholar.py --query "graph neural network drug discovery" # Full chain: compound + disease context python scripts/chain_entry.py --input-json '{"compound": "sotorasib", "disease": "lung cancer"}' # Look up a specific paper and find who cited it python scripts/semantic_scholar.py --paper-id "DOI:10.1038/s41586-021-03819-2" --citations # Recent papers only (last 3 years) python scripts/pubmed_search.py --query "organometallic catalyst drug synthesis" --years 3

scripts/pubmed_search.py

PubMed via NCBI E-utilities (public, no key required, rate limit: 3 req/sec). --query <text> Required. Search query --max-results <N> 1-50 (default: 10) --sort <type> relevance | date (default: relevance) --years <N> Limit to last N years Returns: PMID, title, authors, journal, year, DOI, abstract, MeSH terms, keywords, publication types.

scripts/semantic_scholar.py

Semantic Scholar API (public, no key required, rate limit: 100 req/5 min). --query <text> Search query --paper-id <id> Paper ID (DOI:xxx, PMID:xxx, ArXiv:xxx) --related Get references of a paper (requires --paper-id) --citations Get papers citing a paper (requires --paper-id) --max-results <N> 1-50 (default: 10) --year-range <range> e.g., "2020-2026" or "2023-" Returns: title, authors, year, abstract, TLDR, citation count, influential citations, DOI, ArXiv ID, open-access PDF URL.

scripts/chain_entry.py

Standard PharmaClaw chain interface. Searches both PubMed and Semantic Scholar, deduplicates, and sorts by citation impact. Input keys: query, compound/name, target, disease, mechanism, reaction, topic, doi, pmid, max_results, years, context Automatic query building: {"compound": "aspirin", "disease": "colorectal cancer"} โ†’ searches "aspirin colorectal cancer"

Chaining

FromInputToChemistry QueryCompound name/SMILESLiterature โ†’ find published studiesCatalyst DesignReaction typeLiterature โ†’ find catalyst optimization papersLiteratureKey findingsPharmacology โ†’ validate claimsLiteratureSynthesis referencesChemistry Query โ†’ retrosynthesisLiteraturePatent mentionsIP Expansion โ†’ FTO analysis

Category context

Code helpers, APIs, CLIs, browser automation, testing, and developer operations.

Source: Tencent SkillHub

Largest current source with strong distribution and engagement signals.

Package contents

Included in package
5 Scripts1 Docs
  • SKILL.md Primary doc
  • scripts/biorxiv_search.py Scripts
  • scripts/chain_entry_v2.py Scripts
  • scripts/chain_entry.py Scripts
  • scripts/clinicaltrials_search.py Scripts
  • scripts/pubmed_search.py Scripts