Requirements
- Target platform
- OpenClaw
- Install method
- Manual import
- Extraction
- Extract archive
- Prerequisites
- OpenClaw
- Primary doc
- SKILL.md
Search and retrieve biomedical and scientific literature from PubMed and Semantic Scholar with structured summaries, citation tracking, and open-access PDFs.
Search and retrieve biomedical and scientific literature from PubMed and Semantic Scholar with structured summaries, citation tracking, and open-access PDFs.
Hand the extracted package to your coding agent with a concrete install brief instead of figuring it out manually.
I downloaded a skill package from Yavira. Read SKILL.md from the extracted folder and install it by following the included instructions. Tell me what you changed and call out any manual steps you could not complete.
I downloaded an updated skill package from Yavira. Read SKILL.md from the extracted folder, compare it with my current installation, and upgrade it while preserving any custom configuration unless the package docs explicitly say otherwise. Summarize what changed and any follow-up checks I should run.
Dual-source literature search combining PubMed (biomedical focus) and Semantic Scholar (broader CS/ML/AI coverage). Deduplicates across sources, enriches with citation metrics and TLDR summaries. Key capabilities: PubMed search with MeSH terms, abstracts, publication types Semantic Scholar search with citation counts, influential citations, TLDR Paper lookup by DOI or PMID Citation tracking (who cited this paper?) Related paper discovery (what did this paper reference?) Automatic query construction from compound/target/disease inputs Cross-source deduplication and enrichment
# Search by topic python scripts/pubmed_search.py --query "KRAS G12C inhibitor" --max-results 5 # Search Semantic Scholar (includes ML/AI papers) python scripts/semantic_scholar.py --query "graph neural network drug discovery" # Full chain: compound + disease context python scripts/chain_entry.py --input-json '{"compound": "sotorasib", "disease": "lung cancer"}' # Look up a specific paper and find who cited it python scripts/semantic_scholar.py --paper-id "DOI:10.1038/s41586-021-03819-2" --citations # Recent papers only (last 3 years) python scripts/pubmed_search.py --query "organometallic catalyst drug synthesis" --years 3
PubMed via NCBI E-utilities (public, no key required, rate limit: 3 req/sec). --query <text> Required. Search query --max-results <N> 1-50 (default: 10) --sort <type> relevance | date (default: relevance) --years <N> Limit to last N years Returns: PMID, title, authors, journal, year, DOI, abstract, MeSH terms, keywords, publication types.
Semantic Scholar API (public, no key required, rate limit: 100 req/5 min). --query <text> Search query --paper-id <id> Paper ID (DOI:xxx, PMID:xxx, ArXiv:xxx) --related Get references of a paper (requires --paper-id) --citations Get papers citing a paper (requires --paper-id) --max-results <N> 1-50 (default: 10) --year-range <range> e.g., "2020-2026" or "2023-" Returns: title, authors, year, abstract, TLDR, citation count, influential citations, DOI, ArXiv ID, open-access PDF URL.
Standard PharmaClaw chain interface. Searches both PubMed and Semantic Scholar, deduplicates, and sorts by citation impact. Input keys: query, compound/name, target, disease, mechanism, reaction, topic, doi, pmid, max_results, years, context Automatic query building: {"compound": "aspirin", "disease": "colorectal cancer"} โ searches "aspirin colorectal cancer"
FromInputToChemistry QueryCompound name/SMILESLiterature โ find published studiesCatalyst DesignReaction typeLiterature โ find catalyst optimization papersLiteratureKey findingsPharmacology โ validate claimsLiteratureSynthesis referencesChemistry Query โ retrosynthesisLiteraturePatent mentionsIP Expansion โ FTO analysis
Code helpers, APIs, CLIs, browser automation, testing, and developer operations.
Largest current source with strong distribution and engagement signals.