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    "slug": "running-r-analysis-in-existing-projects",
    "name": "Running R Analysis In Existing Projects",
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    "sections": [
      {
        "title": "Running R Analysis in Existing Projects",
        "body": "This skill operates inside an already structured R project. It helps extend, debug, or enhance existing analyses without recreating the project from scratch.\n\nUse this skill when the user wants to:\n\nContinue analysis in an existing R project\nModify or extend R scripts\nAdd new statistical models or tests\nUpdate plots or figures\nRegenerate reports after data or code changes\nDebug R errors in a project"
      },
      {
        "title": "What This Skill Does",
        "body": "When activated, this skill will:\n\nUnderstand the project structure\n\nDetect folders like data/, scripts/, results/, reports/\nIdentify .Rproj, .Rmd, .qmd, or .R files\n\n\n\nInspect existing analysis\n\nRead current scripts and reports\nIdentify which packages and methods are being used\nAvoid rewriting working components unnecessarily\n\n\n\nExtend or modify analysis\n\nAdd new models or statistical tests\nIntroduce new plots using ggplot2\nAdd new data processing steps\nImprove code structure or reproducibility\n\n\n\nRe-run and update outputs\n\nRecompute results\nOverwrite or version new outputs in results/\nRe-render R Markdown or Quarto reports\n\n\n\nDebug issues\n\nFix missing packages\nResolve file path problems\nHandle common R errors and warnings"
      },
      {
        "title": "Example User Requests That Should Trigger This Skill",
        "body": "\"Add a survival analysis to this R project\"\n\"Update the plots in my report\"\n\"This R Markdown file throws an error, fix it\"\n\"Extend this analysis with a mixed-effects model\"\n\"Re-run everything after I updated the data\""
      },
      {
        "title": "Example Workflow",
        "body": "User: Add a logistic regression model and update the report.\n\nSkill actions:\n\nLocate main analysis script\nAdd logistic regression using glm()\nSave model summary to results/\nUpdate report with new section and plot\nRe-render HTML/PDF report"
      },
      {
        "title": "Tools & Packages Commonly Used",
        "body": "PurposeR PackagesData wranglingtidyverse, dplyrModelingstats, lme4, glmnetVisualizationggplot2Reportingrmarkdown, quartoProject managementhere, renv"
      },
      {
        "title": "Notes",
        "body": "Respect the existing project structure and style\nDo not delete user code unless explicitly requested\nPrefer incremental updates over full rewrites\nAlways regenerate reports after modifying analysis"
      }
    ],
    "body": "Running R Analysis in Existing Projects\n\nThis skill operates inside an already structured R project. It helps extend, debug, or enhance existing analyses without recreating the project from scratch.\n\nUse this skill when the user wants to:\n\nContinue analysis in an existing R project\nModify or extend R scripts\nAdd new statistical models or tests\nUpdate plots or figures\nRegenerate reports after data or code changes\nDebug R errors in a project\nWhat This Skill Does\n\nWhen activated, this skill will:\n\nUnderstand the project structure\n\nDetect folders like data/, scripts/, results/, reports/\nIdentify .Rproj, .Rmd, .qmd, or .R files\n\nInspect existing analysis\n\nRead current scripts and reports\nIdentify which packages and methods are being used\nAvoid rewriting working components unnecessarily\n\nExtend or modify analysis\n\nAdd new models or statistical tests\nIntroduce new plots using ggplot2\nAdd new data processing steps\nImprove code structure or reproducibility\n\nRe-run and update outputs\n\nRecompute results\nOverwrite or version new outputs in results/\nRe-render R Markdown or Quarto reports\n\nDebug issues\n\nFix missing packages\nResolve file path problems\nHandle common R errors and warnings\nExample User Requests That Should Trigger This Skill\n\"Add a survival analysis to this R project\"\n\"Update the plots in my report\"\n\"This R Markdown file throws an error, fix it\"\n\"Extend this analysis with a mixed-effects model\"\n\"Re-run everything after I updated the data\"\nExample Workflow\n\nUser: Add a logistic regression model and update the report.\n\nSkill actions:\n\nLocate main analysis script\nAdd logistic regression using glm()\nSave model summary to results/\nUpdate report with new section and plot\nRe-render HTML/PDF report\nTools & Packages Commonly Used\nPurpose\tR Packages\nData wrangling\ttidyverse, dplyr\nModeling\tstats, lme4, glmnet\nVisualization\tggplot2\nReporting\trmarkdown, quarto\nProject management\there, renv\nNotes\nRespect the existing project structure and style\nDo not delete user code unless explicitly requested\nPrefer incremental updates over full rewrites\nAlways regenerate reports after modifying analysis"
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    "provenanceUrl": "https://clawhub.ai/JackKuo666/running-r-analysis-in-existing-projects",
    "publisherUrl": "https://clawhub.ai/JackKuo666/running-r-analysis-in-existing-projects",
    "owner": "JackKuo666",
    "version": "0.1.0",
    "license": null,
    "verificationStatus": "Indexed source record"
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